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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13052 and 13053 are separated by 305 nucleotides
13053 and 13054 are separated by 103 nucleotides
13054 and 13055 are separated by 415 nucleotides
13055 and 13056 are separated by 2702 nucleotides
mRNA_4684: 13052 - K12603 CNOT6, CCR4 CCR4-NOT transcription complex subunit 6, at 766,790 to 769,374
13052
mRNA_4685: 13053 - K18192 ATP10 mitochondrial ATPase complex subunit ATP10, at 769,680 to 770,905
13053
mRNA_4686: 13054 - HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205, at 771,009 to 771,893
13054
mRNA_4687: 13055 - BLAST Autophagy-related protein 11 [Termitomyces sp. J132], at 772,309 to 775,320
13055
mRNA_4688: 13056 - Hypothetical Protein, at 778,023 to 779,802
13056
Group
Condition
mRNA
_4684
mRNA
_4685
mRNA
_4686
mRNA
_4687
mRNA
_4688
13052
13053
13054
13055
13056
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-3.0
-1.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.3
-1.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-2.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.2
-0.8
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
-0.6
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.9
+0.3
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-1.0
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-1.4
+0.5
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.6
+0.1
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.5
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
+0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
-0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.8
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+1.7
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.8
+0.8
+0.0
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