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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13059 and 13060 are separated by 276 nucleotides
13060 and 13061 are separated by 646 nucleotides
13061 and 13062 are separated by 2021 nucleotides
13062 and 13063 are separated by 328 nucleotides
mRNA_4691: 13059 - Hypothetical Protein, at 787,368 to 788,152
13059
mRNA_4692: 13060 - K00559 E2.1.1.41, SMT1, ERG6 sterol 24-C-methyltransferase, at 788,429 to 789,828
13060
mRNA_4693: 13061 - Hypothetical Protein, at 790,475 to 790,930
13061
mRNA_4694: 13062 - K11252 H2B histone H2B, at 792,952 to 793,587
13062
mRNA_4695: 13063 - K11251 H2A histone H2A, at 793,916 to 794,516
13063
Group
Condition
mRNA
_4691
mRNA
_4692
mRNA
_4693
mRNA
_4694
mRNA
_4695
13059
13060
13061
13062
13063
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
-1.4
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-1.0
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.3
N.D.
-0.3
growth on ypd
YPD
+0.0
N.D.
-0.6
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.5
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.1
N.D.
-0.2
auxotrophy
Dropout Complete
+0.3
N.D.
+0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.8
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
+0.8
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.6
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
+2.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
+2.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+2.9
N.D.
-0.1
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