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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13067 and 13068 are separated by 285 nucleotides
13068 and 13069 are separated by 479 nucleotides
13069 and 13070 are separated by 197 nucleotides
13070 and 13071 are separated by 213 nucleotides
mRNA_4699: 13067 - K09140 TSR3 pre-rRNA-processing protein TSR3, at 801,271 to 802,584
13067
mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802,870 to 804,709
13068
mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805,189 to 806,290
13069
mRNA_4702: 13070 - K00870 E2.7.1.37 protein kinase, at 806,488 to 808,596
13070
mRNA_4703: 13071 - Hypothetical Protein, at 808,810 to 809,148
13071
Group
Condition
mRNA
_4699
mRNA
_4700
mRNA
_4701
mRNA
_4702
mRNA
_4703
13067
13068
13069
13070
13071
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.0
-0.7
+0.2
-1.1
growth on ricinoleic acid
YNB Glucose
-0.9
-0.4
+0.1
-0.0
-1.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.5
+0.0
-0.3
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
+0.1
+0.1
-0.0
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.6
-0.5
+0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
-0.2
+0.1
-0.4
growth on oleic acid
YNB Glucose
-0.5
-0.8
+0.4
+0.3
+0.2
auxotrophy
YNB Glucose
-0.0
-0.3
+0.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.1
-0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.1
+0.1
-0.0
+0.7
auxotrophy
Dropout Complete
+0.1
-0.2
+0.2
+0.4
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
+0.1
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.4
+0.2
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.7
-0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.2
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.1
+0.4
+0.1
growth on ypd
YPD
+0.6
-0.5
-0.4
+0.1
+1.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
+0.6
+0.5
-0.0
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