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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13069 and 13070 are separated by 197 nucleotides
13070 and 13071 are separated by 213 nucleotides
13071 and 13072 are separated by 154 nucleotides
13072 and 13073 are separated by 402 nucleotides
mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805,189 to 806,290
13069
mRNA_4702: 13070 - K00870 E2.7.1.37 protein kinase, at 806,488 to 808,596
13070
mRNA_4703: 13071 - Hypothetical Protein, at 808,810 to 809,148
13071
mRNA_4704: 13072 - Hypothetical Protein, at 809,303 to 810,124
13072
mRNA_4705: 13073 - K06065 NCOR2, SMRT nuclear receptor co-repressor 2, at 810,527 to 816,039
13073
Group
Condition
mRNA
_4701
mRNA
_4702
mRNA
_4703
mRNA
_4704
mRNA
_4705
13069
13070
13071
13072
13073
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.2
-1.1
N.D.
-1.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-1.5
N.D.
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.4
-0.5
N.D.
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
-1.0
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.2
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
-0.7
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.4
N.D.
+0.0
auxotrophy
Dropout Complete
+0.2
+0.4
-0.4
N.D.
-0.4
auxotrophy
YNB Glucose
+0.0
+0.3
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
+0.3
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.7
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
+0.3
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.4
+0.4
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.5
-0.0
N.D.
-0.7
growth on oleic acid
YNB Glucose
+0.4
+0.3
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
+0.4
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
+0.3
N.D.
-0.4
growth on ypd
YPD
-0.4
+0.1
+1.2
N.D.
+0.1
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