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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13075 and 13076 are separated by 247 nucleotides
13076 and 13077 are separated by 340 nucleotides
13077 and 13078 are separated by 704 nucleotides
13078 and 13079 are separated by 328 nucleotides
mRNA_4707: 13075 - KOG4431 Uncharacterized protein, induced by hypoxia , at 818,806 to 819,404
13075
mRNA_4708: 13076 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 819,652 to 821,476
13076
mRNA_4709: 13077 - Hypothetical Protein, at 821,817 to 823,479
13077
mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824,184 to 826,218
13078
mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826,547 to 830,720
13079
Group
Condition
mRNA
_4707
mRNA
_4708
mRNA
_4709
mRNA
_4710
mRNA
_4711
13075
13076
13077
13078
13079
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-4.7
-0.3
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-3.7
-0.3
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-3.5
+0.3
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-3.1
-0.2
-0.3
+0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.7
-0.9
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-0.8
-0.1
+0.6
-0.1
auxotrophy
Dropout Complete
+0.1
-0.4
-1.3
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.8
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.3
-0.8
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.7
-0.8
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.6
-0.3
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.0
+0.1
-0.1
+0.3
growth on oleic acid
YNB Glucose
+0.4
-0.2
-1.1
+0.3
-0.0
auxotrophy
YNB Glucose
-0.6
+0.0
-0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.9
+0.0
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
-0.6
-1.0
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.6
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.9
-0.2
+0.7
-0.2
growth on ypd
YPD
+1.3
-0.4
-0.4
-0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.1
+0.1
+0.6
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.0
+0.1
+0.1
+0.0
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