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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13077 and 13078 are separated by 704 nucleotides
13078 and 13079 are separated by 328 nucleotides
13079 and 13080 are separated by 232 nucleotides
13080 and 13081 are separated by 334 nucleotides
mRNA_4709: 13077 - Hypothetical Protein, at 821,817 to 823,479
13077
mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824,184 to 826,218
13078
mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826,547 to 830,720
13079
mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830,953 to 834,055
13080
mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834,390 to 838,234
13081
Group
Condition
mRNA
_4709
mRNA
_4710
mRNA
_4711
mRNA
_4712
mRNA
_4713
13077
13078
13079
13080
13081
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
-0.2
-0.1
-0.4
auxotrophy
Dropout Complete
-1.3
-0.2
+0.2
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
-0.8
+0.4
-0.1
-0.2
-0.1
growth on ypd
YPD
-0.4
-0.6
-0.0
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.3
+0.3
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.0
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
-0.0
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.0
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.5
+0.3
-0.5
-0.5
growth on ricinoleic acid
YNB Glucose
-0.8
-0.2
+0.1
+0.7
-0.2
growth on oleic acid
YNB Glucose
-1.1
+0.3
-0.0
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.3
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.2
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.7
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
+0.2
+0.3
+0.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.6
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.2
+0.2
+0.7
+0.1
auxotrophy
YNB Glucose
-0.4
+0.3
+0.1
+0.7
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.6
+0.4
+0.2
-0.2
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