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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13080 and 13081 are separated by 334 nucleotides
13081 and 13082 are separated by 124 nucleotides
13082 and 13083 are separated by 115 nucleotides
13083 and 13084 are separated by 222 nucleotides
mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830,953 to 834,055
13080
mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834,390 to 838,234
13081
mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838,359 to 840,435
13082
mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550
13083
mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668
13084
Group
Condition
mRNA
_4712
mRNA
_4713
mRNA
_4714
mRNA
_4715
mRNA
_4716
13080
13081
13082
13083
13084
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
-1.7
-0.5
-3.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
-0.0
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.2
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
-0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
-0.6
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
-0.7
-0.0
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.1
-0.3
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
-0.4
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.1
+0.1
-0.2
auxotrophy
Dropout Complete
+0.5
+0.1
+0.2
-0.9
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.0
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
+0.3
-0.0
growth on ypd
YPD
+0.4
-0.2
+0.3
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.0
+0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
-0.1
-0.3
+0.3
auxotrophy
YNB Glucose
+0.7
+0.0
-0.1
-0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.3
+0.1
+0.6
growth on oleic acid
YNB Glucose
+0.4
-0.0
-0.2
+0.6
+0.4
growth on ricinoleic acid
YNB Glucose
+0.7
-0.2
+0.3
+0.2
+0.4
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