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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13082 and 13083 are separated by 115 nucleotides
13083 and 13084 are separated by 222 nucleotides
13084 and 13085 are separated by 1417 nucleotides
13085 and 13086 are separated by 841 nucleotides
mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838,359 to 840,435
13082
mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550
13083
mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668
13084
mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844,086 to 846,101
13085
mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026
13086
Group
Condition
mRNA
_4714
mRNA
_4715
mRNA
_4716
mRNA
_4717
mRNA
_4718
13082
13083
13084
13085
13086
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.5
-3.6
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.4
-0.4
-0.2
auxotrophy
Dropout Complete
+0.2
-0.9
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
-0.5
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.3
-0.4
-0.2
auxotrophy
YNB Glucose
-0.1
-0.4
+0.4
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.4
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-0.4
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
+0.3
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.0
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
-0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
+0.4
-0.5
-0.1
growth on ypd
YPD
+0.3
+0.2
-0.3
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.0
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.0
+0.8
+0.0
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.6
+0.4
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
+0.3
+0.5
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.6
+0.3
+0.4
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mRNA_4716
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