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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13084 and 13085 are separated by 1417 nucleotides
13085 and 13086 are separated by 841 nucleotides
13086 and 13087 are separated by 283 nucleotides
13087 and 13088 are separated by 283 nucleotides
mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668
13084
mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844,086 to 846,101
13085
mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026
13086
mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849,310 to 850,936
13087
mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851,220 to 854,422
13088
Group
Condition
mRNA
_4716
mRNA
_4717
mRNA
_4718
mRNA
_4719
mRNA
_4720
13084
13085
13086
13087
13088
ypd buoyancy
40 hrs No Buoyancy Separation
-3.6
+0.1
-0.2
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.2
-0.0
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.4
-0.2
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.5
-0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-0.0
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.3
-0.3
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose
+0.4
-0.4
+0.0
+0.2
-0.2
growth on ypd
YPD
-0.3
+0.0
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.5
+0.0
+0.2
-0.2
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.2
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
+0.0
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
+0.4
+0.1
-0.2
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