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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13086 and 13087 are separated by 283 nucleotides
13087 and 13088 are separated by 283 nucleotides
13088 and 13089 are separated by 242 nucleotides
13089 and 13090 are separated by 345 nucleotides
mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026
13086
mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849,310 to 850,936
13087
mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851,220 to 854,422
13088
mRNA_4721: 13089 - K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4, at 854,665 to 858,103
13089
mRNA_4722: 13090 - K01027 OXCT 3-oxoacid CoA-transferase, at 858,449 to 860,854
13090
Group
Condition
mRNA
_4718
mRNA
_4719
mRNA
_4720
mRNA
_4721
mRNA
_4722
13086
13087
13088
13089
13090
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
-0.3
-2.8
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-0.2
-3.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.1
-3.6
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
-0.1
-3.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.3
-1.9
+0.0
auxotrophy
Dropout Complete
-0.3
+0.5
-0.1
-2.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.1
-1.7
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
-1.7
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.2
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.3
-0.1
-0.1
growth on ypd
YPD
+0.1
+0.1
+0.2
-0.8
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.4
+0.1
-0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.2
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
+0.7
-0.2
auxotrophy
YNB Glucose
+0.0
+0.2
-0.2
+0.7
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.4
+0.1
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
-0.2
+1.8
+0.0
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