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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13094 and 13095 are separated by 279 nucleotides
13095 and 13096 are separated by 70 nucleotides
13096 and 13097 are separated by 200 nucleotides
13097 and 13098 are separated by 324 nucleotides
mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873
13094
mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831
13095
mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638
13096
mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938
13097
mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540
13098
Group
Condition
mRNA
_4726
mRNA
_4727
mRNA
_4728
mRNA
_4729
mRNA
_4730
13094
13095
13096
13097
13098
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
-0.2
+0.0
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
+0.3
+0.0
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.7
-0.3
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.9
-0.1
+0.6
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.2
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.1
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.4
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-1.0
+0.4
-0.2
+1.1
growth on ypd
YPD
+0.4
-0.1
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
+0.4
+0.3
-0.3
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.5
+0.1
+0.7
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
+0.6
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.3
-0.0
+0.4
auxotrophy
YNB Glucose
-0.2
-0.2
+0.2
+0.3
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.2
+0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
-0.4
-0.0
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.3
-0.3
+1.0
auxotrophy
Dropout Complete
-0.1
-0.2
+0.3
+0.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
+0.1
+1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-0.1
+0.6
+1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
+0.5
+0.3
+0.9
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