Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13094 and 13095 are separated by 279 nucleotides13095 and 13096 are separated by 70 nucleotides13096 and 13097 are separated by 200 nucleotides13097 and 13098 are separated by 324 nucleotides mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540 13098
Group Condition mRNA_4726 mRNA_4727 mRNA_4728 mRNA_4729 mRNA_4730
13094 13095 13096 13097 13098
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.1 -0.2 +0.0 -0.8
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 +0.2 +0.3 +0.0 -1.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.7 -0.3 +0.4 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.9 -0.1 +0.6 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.4 +0.2 -0.2 +0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 -1.1 +0.2 +0.2 +0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.0 +0.4 +0.2 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 -1.0 +0.4 -0.2 +1.1
growth on ypd YPD +0.4 -0.1 -0.1 +0.2 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.0 +0.4 +0.3 -0.3
growth on oleic acid YNB Glucose +0.3 -0.2 -0.5 +0.1 +0.7
growth on ricinoleic acid YNB Glucose -0.0 -0.3 +0.6 +0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 -0.1 -0.3 -0.0 +0.4
auxotrophy YNB Glucose -0.2 -0.2 +0.2 +0.3 +0.6
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.2 +0.2 +0.4 +0.4
growth on oleic acid YNB Oleic Acid +0.3 -0.3 -0.4 -0.0 +1.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.2 -0.3 -0.3 +1.0
auxotrophy Dropout Complete -0.1 -0.2 +0.3 +0.3 +0.8
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -0.1 +0.1 +0.1 +1.2
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.0 -0.1 +0.6 +1.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.3 +0.5 +0.3 +0.9
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