Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13095 and 13096 are separated by 70 nucleotides13096 and 13097 are separated by 200 nucleotides13097 and 13098 are separated by 324 nucleotides13098 and 13099 are separated by 199 nucleotides mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876,740 to 878,353 13099
Group Condition mRNA_4727 mRNA_4728 mRNA_4729 mRNA_4730 mRNA_4731
13095 13096 13097 13098 13099
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 -0.2 +0.0 -0.8 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.7 -0.3 +0.4 -0.2 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.9 -0.1 +0.6 -0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 +0.3 +0.0 -1.1 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -1.1 +0.2 +0.2 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.3 -0.0 +0.4 -0.1
growth on ypd YPD -0.1 -0.1 +0.2 -0.2 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.4 +0.2 -0.5 -0.1
growth on oleic acid YNB Glucose -0.2 -0.5 +0.1 +0.7 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.2 +0.1 -0.1 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.4 +0.3 -0.3 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 -0.3 -0.3 +1.0 -0.2
growth on oleic acid YNB Oleic Acid -0.3 -0.4 -0.0 +1.1 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -1.0 +0.4 -0.2 +1.1 +0.4
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.2 +0.4 +0.4 -0.2
growth on ricinoleic acid YNB Glucose -0.3 +0.6 +0.2 -0.1 +0.3
auxotrophy YNB Glucose -0.2 +0.2 +0.3 +0.6 -0.1
auxotrophy Dropout Complete -0.2 +0.3 +0.3 +0.8 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.0 -0.1 +0.6 +1.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.1 +0.1 +1.2 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.5 +0.3 +0.9 +0.3
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