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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13096 and 13097 are separated by 200 nucleotides
13097 and 13098 are separated by 324 nucleotides
13098 and 13099 are separated by 199 nucleotides
13099 and 13100 are separated by 1078 nucleotides
mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638
13096
mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938
13097
mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540
13098
mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876,740 to 878,353
13099
mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805
13100
Group
Condition
mRNA
_4728
mRNA
_4729
mRNA
_4730
mRNA
_4731
mRNA
_4732
13096
13097
13098
13099
13100
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-0.8
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.4
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.0
-1.1
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
+0.4
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
+1.0
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.5
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.6
-0.2
-0.1
-0.0
growth on ypd
YPD
-0.1
+0.2
-0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.5
+0.1
+0.7
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
+0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
+0.4
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
-0.3
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.0
+1.1
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.2
-0.1
+0.3
-0.3
auxotrophy
YNB Glucose
+0.2
+0.3
+0.6
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+1.1
-0.2
-0.4
auxotrophy
Dropout Complete
+0.3
+0.3
+0.8
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
+1.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+1.2
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.3
+0.9
+0.3
-0.3
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