Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13096 and 13097 are separated by 200 nucleotides13097 and 13098 are separated by 324 nucleotides13098 and 13099 are separated by 199 nucleotides13099 and 13100 are separated by 1078 nucleotides mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874,263 to 876,540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876,740 to 878,353 13099 mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805 13100
Group Condition mRNA_4728 mRNA_4729 mRNA_4730 mRNA_4731 mRNA_4732
13096 13097 13098 13099 13100
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.0 -0.8 -0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.4 -0.2 -0.1 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.0 -1.1 -0.0 +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.0 +0.4 -0.1 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.1 -0.1 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.3 +1.0 -0.2 -0.3
ypd buoyancy 40 hrs High Buoyancy +0.4 +0.2 -0.5 -0.1 +0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.6 -0.2 -0.1 -0.0
growth on ypd YPD -0.1 +0.2 -0.2 +0.1 +0.3
growth on oleic acid YNB Glucose -0.5 +0.1 +0.7 -0.0 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.2 +0.3 -0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.4 +0.4 -0.2 -0.4
ypd buoyancy 40 hrs Median Buoyancy +0.4 +0.3 -0.3 -0.0 +0.1
growth on oleic acid YNB Oleic Acid -0.4 -0.0 +1.1 +0.0 -0.1
growth on ricinoleic acid YNB Glucose +0.6 +0.2 -0.1 +0.3 -0.3
auxotrophy YNB Glucose +0.2 +0.3 +0.6 -0.1 -0.4
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.6 +1.1 -0.2 -0.4
auxotrophy Dropout Complete +0.3 +0.3 +0.8 -0.0 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 -0.2 +1.1 +0.4 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.1 +1.2 +0.1 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 +0.3 +0.9 +0.3 -0.3
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