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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13101 and 13102 are separated by 900 nucleotides
13102 and 13103 are separated by 484 nucleotides
13103 and 13104 are separated by 103 nucleotides
13104 and 13105 are separated by 99 nucleotides
mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284
13101
mRNA_4734: 13102 - Hypothetical Protein, at 883,185 to 884,845
13102
mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885,330 to 888,560
13103
mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888,664 to 889,665
13104
mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889,765 to 891,262
13105
Group
Condition
mRNA
_4733
mRNA
_4734
mRNA
_4735
mRNA
_4736
mRNA
_4737
13101
13102
13103
13104
13105
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.4
-0.5
-0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.6
-0.1
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.2
-0.0
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.0
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.4
+0.0
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.4
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.5
-0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.1
+0.1
+0.2
auxotrophy
Dropout Complete
-0.3
+0.3
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
+0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.4
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
+0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
+0.2
+0.1
-0.0
auxotrophy
YNB Glucose
+0.0
+0.3
+0.3
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.5
+0.6
+0.4
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.6
+0.3
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.7
+0.3
+0.0
+0.4
growth on ypd
YPD
+0.5
+0.9
+0.2
+0.8
-0.0
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