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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13103 and 13104 are separated by 103 nucleotides
13104 and 13105 are separated by 99 nucleotides
13105 and 13106 are separated by 68 nucleotides
13106 and 13107 are separated by 459 nucleotides
mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885,330 to 888,560
13103
mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888,664 to 889,665
13104
mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889,765 to 891,262
13105
mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891,331 to 893,508
13106
mRNA_4739: 13107 - K06883 K06883 uncharacterized protein, at 893,968 to 895,440
13107
Group
Condition
mRNA
_4735
mRNA
_4736
mRNA
_4737
mRNA
_4738
mRNA
_4739
13103
13104
13105
13106
13107
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
-0.6
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
-0.2
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
+0.3
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.3
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.6
-0.2
-0.5
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.0
-0.3
N.D.
auxotrophy
YNB Glucose
+0.3
+0.2
+0.3
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
+0.3
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
+0.1
-0.4
N.D.
auxotrophy
Dropout Complete
+0.1
+0.2
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
+0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
+0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.3
-0.1
N.D.
growth on ypd
YPD
+0.2
+0.8
-0.0
-0.3
N.D.
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