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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13105 and 13106 are separated by 68 nucleotides
13106 and 13107 are separated by 459 nucleotides
13107 and 13108 are separated by 646 nucleotides
13108 and 13109 are separated by 259 nucleotides
mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889,765 to 891,262
13105
mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891,331 to 893,508
13106
mRNA_4739: 13107 - K06883 K06883 uncharacterized protein, at 893,968 to 895,440
13107
mRNA_4740: 13108 - Hypothetical Protein, at 896,087 to 896,524
13108
mRNA_4741: 13109 - KOG2208 Vigilin, at 896,784 to 901,112
13109
Group
Condition
mRNA
_4737
mRNA
_4738
mRNA
_4739
mRNA
_4740
mRNA
_4741
13105
13106
13107
13108
13109
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
N.D.
-0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.6
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
N.D.
+0.2
-0.8
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
-0.2
-0.3
auxotrophy
YNB Glucose
+0.3
-0.5
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.0
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.3
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
N.D.
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
N.D.
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.1
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
N.D.
+0.1
-0.0
growth on ypd
YPD
-0.0
-0.3
N.D.
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
N.D.
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.5
N.D.
+0.1
+1.1
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