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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13107 and 13108 are separated by 646 nucleotides
13108 and 13109 are separated by 259 nucleotides
13109 and 13110 are separated by 278 nucleotides
13110 and 13111 are separated by 1290 nucleotides
mRNA_4739: 13107 - K06883 K06883 uncharacterized protein, at 893,968 to 895,440
13107
mRNA_4740: 13108 - Hypothetical Protein, at 896,087 to 896,524
13108
mRNA_4741: 13109 - KOG2208 Vigilin, at 896,784 to 901,112
13109
mRNA_4742: 13110 - SUPERFAMILY--SSF52047, at 901,391 to 902,457
13110
mRNA_4743: 13111 - BLAST Nucleolar protein 4 [Choanephora cucurbitarum], at 903,748 to 904,899
13111
Group
Condition
mRNA
_4739
mRNA
_4740
mRNA
_4741
mRNA
_4742
mRNA
_4743
13107
13108
13109
13110
13111
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.8
+0.2
-0.9
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.0
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.4
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.1
-0.5
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.6
+0.1
+0.4
auxotrophy
Dropout Complete
N.D.
-0.2
-0.3
-0.5
+0.8
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
-0.2
-0.0
-0.4
+0.6
growth on ypd
YPD
N.D.
+0.5
+0.3
-0.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
-0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.4
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.5
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
+0.3
+0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+1.1
-0.4
+0.2
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