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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13110 and 13111 are separated by 1290 nucleotides
13111 and 13112 are separated by 1103 nucleotides
13112 and 13113 are separated by 525 nucleotides
13113 and 13114 are separated by 290 nucleotides
mRNA_4742: 13110 - SUPERFAMILY--SSF52047, at 901,391 to 902,457
13110
mRNA_4743: 13111 - BLAST Nucleolar protein 4 [Choanephora cucurbitarum], at 903,748 to 904,899
13111
mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906,003 to 908,213
13112
mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908,739 to 911,438
13113
mRNA_4746: 13114 - Hypothetical Protein, at 911,729 to 913,359
13114
Group
Condition
mRNA
_4742
mRNA
_4743
mRNA
_4744
mRNA
_4745
mRNA
_4746
13110
13111
13112
13113
13114
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.6
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.6
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.5
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.9
-0.5
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.3
-0.4
+0.1
-0.0
auxotrophy
YNB Glucose
-0.4
+0.6
-0.4
-0.0
-0.2
growth on ypd
YPD
-0.5
-0.3
+0.0
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
+0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.1
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.0
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.0
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
-0.1
-0.0
+0.4
auxotrophy
Dropout Complete
-0.5
+0.8
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.5
-0.1
-0.1
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.3
-0.0
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.9
-0.0
+0.2
+0.2
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