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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13111 and 13112 are separated by 1103 nucleotides
13112 and 13113 are separated by 525 nucleotides
13113 and 13114 are separated by 290 nucleotides
13114 and 13115 are separated by 316 nucleotides
mRNA_4743: 13111 - BLAST Nucleolar protein 4 [Choanephora cucurbitarum], at 903,748 to 904,899
13111
mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906,003 to 908,213
13112
mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908,739 to 911,438
13113
mRNA_4746: 13114 - Hypothetical Protein, at 911,729 to 913,359
13114
mRNA_4747: 13115 - SUPERFAMILY--SSF52047, at 913,676 to 915,300
13115
Group
Condition
mRNA
_4743
mRNA
_4744
mRNA
_4745
mRNA
_4746
mRNA
_4747
13111
13112
13113
13114
13115
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.5
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.1
-0.8
+0.3
-1.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
-0.0
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-0.2
-0.2
+0.1
auxotrophy
YNB Glucose
+0.6
-0.4
-0.0
-0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.1
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.6
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
+0.1
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.3
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
-0.3
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.2
+0.2
+0.1
growth on ypd
YPD
-0.3
+0.0
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.1
+0.4
-0.1
auxotrophy
Dropout Complete
+0.8
-0.1
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.1
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
-0.0
+0.2
+0.2
+0.0
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