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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13116 and 13117 are separated by 308 nucleotides
13117 and 13118 are separated by 296 nucleotides
13118 and 13119 are separated by 288 nucleotides
13119 and 13120 are separated by 250 nucleotides
mRNA_4748: 13116 - Hypothetical Protein, at 915,599 to 917,193
13116
mRNA_4749: 13117 - SUPERFAMILY--SSF52047, at 917,502 to 919,114
13117
mRNA_4750: 13118 - Hypothetical Protein, at 919,411 to 921,092
13118
mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921,381 to 922,742
13119
mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297
13120
Group
Condition
mRNA
_4748
mRNA
_4749
mRNA
_4750
mRNA
_4751
mRNA
_4752
13116
13117
13118
13119
13120
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.6
+0.3
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.3
-0.0
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.5
-0.9
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.0
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
-0.4
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.3
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
+0.3
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.1
-0.3
+0.1
auxotrophy
YNB Glucose
-0.1
+0.1
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.5
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.0
-0.1
+0.1
growth on ypd
YPD
+0.2
-0.4
-0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
+0.6
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.6
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.8
+0.4
-0.3
+0.1
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