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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13118 and 13119 are separated by 288 nucleotides
13119 and 13120 are separated by 250 nucleotides
13120 and 13121 are separated by 285 nucleotides
13121 and 13122 are separated by 544 nucleotides
mRNA_4750: 13118 - Hypothetical Protein, at 919,411 to 921,092
13118
mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921,381 to 922,742
13119
mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297
13120
mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927,583 to 931,061
13121
mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931,606 to 933,249
13122
Group
Condition
mRNA
_4750
mRNA
_4751
mRNA
_4752
mRNA
_4753
mRNA
_4754
13118
13119
13120
13121
13122
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.6
-0.1
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.5
-0.6
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.1
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
-0.1
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.5
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.2
+0.1
+0.3
auxotrophy
YNB Glucose
+0.0
-0.2
+0.1
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.1
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.0
+0.1
+0.2
-0.0
growth on ypd
YPD
-0.1
+0.1
+0.4
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
+0.0
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
-0.3
+0.3
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.0
+0.2
+0.0
+0.2
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