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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13119 and 13120 are separated by 250 nucleotides
13120 and 13121 are separated by 285 nucleotides
13121 and 13122 are separated by 544 nucleotides
13122 and 13123 are separated by 1233 nucleotides
mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921,381 to 922,742
13119
mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297
13120
mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927,583 to 931,061
13121
mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931,606 to 933,249
13122
mRNA_4755: 13123 - Hypothetical Protein, at 934,483 to 935,126
13123
Group
Condition
mRNA
_4751
mRNA
_4752
mRNA
_4753
mRNA
_4754
mRNA
_4755
13119
13120
13121
13122
13123
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
-0.0
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
-0.1
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.1
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.1
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.6
+0.0
+0.2
+0.8
auxotrophy
YNB Glucose
-0.2
+0.1
+0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.0
+0.2
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
-0.0
-0.0
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.0
+0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
-0.0
+0.1
+0.1
growth on ypd
YPD
+0.1
+0.4
-0.0
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
-0.1
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.0
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.1
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
+0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.0
+0.2
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.2
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.2
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.1
+0.1
+0.7
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