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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13120 and 13121 are separated by 285 nucleotides
13121 and 13122 are separated by 544 nucleotides
13122 and 13123 are separated by 1233 nucleotides
13123 and 13124 are separated by 305 nucleotides
mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297
13120
mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927,583 to 931,061
13121
mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931,606 to 933,249
13122
mRNA_4755: 13123 - Hypothetical Protein, at 934,483 to 935,126
13123
mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935,432 to 936,982
13124
Group
Condition
mRNA
_4752
mRNA
_4753
mRNA
_4754
mRNA
_4755
mRNA
_4756
13120
13121
13122
13123
13124
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.2
+0.8
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
+0.1
-0.3
+0.2
growth on ypd
YPD
+0.4
-0.0
-0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.3
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
+0.2
-0.2
+0.2
auxotrophy
YNB Glucose
+0.1
+0.1
-0.0
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.3
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.0
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
+0.2
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.1
+0.7
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.0
+0.3
-0.0
+0.3
auxotrophy
Dropout Complete
+0.1
-0.0
-0.0
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.0
+0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.2
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
+0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.2
+0.4
+0.6
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