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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13123 and 13124 are separated by 305 nucleotides
13124 and 13125 are separated by 416 nucleotides
13125 and 13126 are separated by 273 nucleotides
13126 and 13127 are separated by 1100 nucleotides
mRNA_4755: 13123 - Hypothetical Protein, at 934,483 to 935,126
13123
mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935,432 to 936,982
13124
mRNA_4757: 13125 - Hypothetical Protein, at 937,399 to 937,793
13125
mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280
13126
mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157
13127
Group
Condition
mRNA
_4755
mRNA
_4756
mRNA
_4757
mRNA
_4758
mRNA
_4759
13123
13124
13125
13126
13127
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.3
+0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.6
-0.6
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
-0.2
+0.3
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
-0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.4
-0.3
+0.3
-0.2
growth on ypd
YPD
-0.2
+0.1
+0.4
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.1
-0.4
+0.4
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.6
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
-0.1
-0.2
+0.6
growth on oleic acid
YNB Glucose
-0.0
+0.3
+0.2
-0.1
+0.2
auxotrophy
Dropout Complete
+0.2
+0.3
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.7
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
+0.1
+0.1
+0.5
auxotrophy
YNB Glucose
-0.1
+0.3
+0.1
+0.2
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.2
+0.6
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.6
+0.1
-0.1
+0.5
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