Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13125 and 13126 are separated by 273 nucleotides
13126 and 13127 are separated by 1100 nucleotides
13127 and 13128 are separated by 174 nucleotides
13128 and 13129 are separated by 315 nucleotides
mRNA_4757: 13125 - Hypothetical Protein, at 937,399 to 937,793
13125
mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280
13126
mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157
13127
mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070
13128
mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694
13129
Group
Condition
mRNA
_4757
mRNA
_4758
mRNA
_4759
mRNA
_4760
mRNA
_4761
13125
13126
13127
13128
13129
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
-0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.4
-0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.3
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
-0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
+0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.5
-0.1
N.D.
growth on ypd
YPD
+0.4
-0.1
+0.0
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.5
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.5
-0.2
N.D.
auxotrophy
YNB Glucose
+0.1
+0.2
+0.5
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.6
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.0
+0.2
-0.2
N.D.
remove
mRNA_4757
plot
remove
mRNA_4758
plot
remove
mRNA_4759
remove
mRNA_4760
plot
remove
mRNA_4761
plot