Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13126 and 13127 are separated by 1100 nucleotides13127 and 13128 are separated by 174 nucleotides13128 and 13129 are separated by 315 nucleotides13129 and 13130 are separated by 1095 nucleotides mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280 13126 mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157 13127 mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070 13128 mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694 13129 mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130
Group Condition mRNA_4758 mRNA_4759 mRNA_4760 mRNA_4761 mRNA_4762
13126 13127 13128 13129 13130
growth on ricinoleic acid YNB Glucose +0.1 +0.2 -0.4 N.D. -1.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 +0.2 -0.2 N.D. -1.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.6 -0.1 N.D. -0.7
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 +0.2 -0.3 N.D. -0.8
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.5 -0.2 N.D. -1.0
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.3 +0.2 N.D. -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.4 -0.0 N.D. -0.1
auxotrophy Dropout Complete -0.0 +0.0 -0.1 N.D. +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +0.2 -0.1 N.D. +0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.1 -0.2 N.D. +0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 -0.2 -0.0 N.D. +0.2
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.1 -0.1 N.D. +0.1
growth on ypd YPD -0.1 +0.0 +0.0 N.D. +0.4
auxotrophy YNB Glucose +0.2 +0.5 -0.2 N.D. -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.5 +0.0 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.2 +0.1 N.D. +0.7
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.4 +0.0 N.D. +0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 +0.5 -0.1 N.D. +0.6
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.2 +0.3 N.D. +0.2
growth on oleic acid YNB Oleic Acid -0.2 +0.6 +0.3 N.D. +0.4
growth on oleic acid YNB Glucose -0.1 +0.2 -0.0 N.D. +1.1
remove
mRNA_4758
plot
remove
mRNA_4759
plot
remove
mRNA_4760
remove
mRNA_4761
plot
remove
mRNA_4762
plot