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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13126 and 13127 are separated by 1100 nucleotides
13127 and 13128 are separated by 174 nucleotides
13128 and 13129 are separated by 315 nucleotides
13129 and 13130 are separated by 1095 nucleotides
mRNA_4758: 13126 - HMMPfam-Autophagy-related protein 27-PF09451,SUPERFAMILY--SSF50911, at 938,067 to 939,280
13126
mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157
13127
mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070
13128
mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694
13129
mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960
13130
Group
Condition
mRNA
_4758
mRNA
_4759
mRNA
_4760
mRNA
_4761
mRNA
_4762
13126
13127
13128
13129
13130
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.4
N.D.
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.2
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.6
-0.1
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.3
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
-0.2
N.D.
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
-0.0
N.D.
-0.1
auxotrophy
Dropout Complete
-0.0
+0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.1
N.D.
+0.1
growth on ypd
YPD
-0.1
+0.0
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose
+0.2
+0.5
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.5
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
+0.1
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.5
-0.1
N.D.
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.3
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.6
+0.3
N.D.
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.0
N.D.
+1.1
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