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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13127 and 13128 are separated by 174 nucleotides
13128 and 13129 are separated by 315 nucleotides
13129 and 13130 are separated by 1095 nucleotides
13130 and 13131 are separated by 709 nucleotides
mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157
13127
mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070
13128
mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694
13129
mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960
13130
mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404
13131
Group
Condition
mRNA
_4759
mRNA
_4760
mRNA
_4761
mRNA
_4762
mRNA
_4763
13127
13128
13129
13130
13131
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
N.D.
-0.7
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
N.D.
-1.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
-0.8
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
N.D.
-1.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
N.D.
-1.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.0
N.D.
-0.1
+0.2
growth on ypd
YPD
+0.0
+0.0
N.D.
+0.4
-0.5
auxotrophy
Dropout Complete
+0.0
-0.1
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
+0.5
-0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.6
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.0
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
N.D.
+0.6
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.3
N.D.
+0.4
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.0
N.D.
+1.1
+0.2
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