Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13128 and 13129 are separated by 315 nucleotides
13129 and 13130 are separated by 1095 nucleotides
13130 and 13131 are separated by 709 nucleotides
13131 and 13132 are separated by 2243 nucleotides
mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070
13128
mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694
13129
mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960
13130
mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404
13131
mRNA_4764: 13132 - K12842 SR140 U2-associated protein SR140, at 954,648 to 957,720
13132
Group
Condition
mRNA
_4760
mRNA
_4761
mRNA
_4762
mRNA
_4763
mRNA
_4764
13128
13129
13130
13131
13132
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-1.1
+0.1
-1.9
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-1.0
+0.0
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.2
-0.1
-2.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.8
-0.1
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.7
-0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.6
-0.0
-2.4
auxotrophy
YNB Glucose
-0.2
N.D.
-0.1
+0.1
-1.5
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
-1.1
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.1
+0.1
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.6
+0.1
-1.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.5
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
+0.1
-0.5
auxotrophy
Dropout Complete
-0.1
N.D.
+0.1
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
-0.0
-0.2
growth on oleic acid
YNB Glucose
-0.0
N.D.
+1.1
+0.2
-1.2
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.4
-0.0
-0.4
growth on ypd
YPD
+0.0
N.D.
+0.4
-0.5
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.1
+0.2
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.3
-0.0
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.7
+0.2
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.2
+0.1
+1.5
remove
mRNA_4760
plot
remove
mRNA_4761
plot
remove
mRNA_4762
remove
mRNA_4763
plot
remove
mRNA_4764
plot