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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13130 and 13131 are separated by 709 nucleotides
13131 and 13132 are separated by 2243 nucleotides
13132 and 13133 are separated by 279 nucleotides
13133 and 13134 are separated by 239 nucleotides
mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960
13130
mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404
13131
mRNA_4764: 13132 - K12842 SR140 U2-associated protein SR140, at 954,648 to 957,720
13132
mRNA_4765: 13133 - SUPERFAMILY--SSF52058, at 958,000 to 961,527
13133
mRNA_4766: 13134 - BLAST ribonuclease e [Moniliophthora roreri MCA 2997], at 961,767 to 963,160
13134
Group
Condition
mRNA
_4762
mRNA
_4763
mRNA
_4764
mRNA
_4765
mRNA
_4766
13130
13131
13132
13133
13134
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.1
-1.9
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-2.4
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.0
-1.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
-1.1
-0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.0
-2.4
+0.1
-0.2
auxotrophy
YNB Glucose
-0.1
+0.1
-1.5
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
-1.1
+0.1
-0.4
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-1.2
+0.2
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
-1.7
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-1.5
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
-0.5
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
-0.4
+0.1
+0.7
auxotrophy
Dropout Complete
+0.1
-0.0
-0.2
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
-0.0
-0.4
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.2
+0.1
-0.0
growth on ypd
YPD
+0.4
-0.5
+0.5
-0.1
-0.2
growth on oleic acid
YNB Glucose
+1.1
+0.2
-1.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.9
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.2
+0.7
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
+0.9
+0.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+1.5
+0.0
+0.5
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