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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13133 and 13134 are separated by 239 nucleotides
13134 and 13135 are separated by 322 nucleotides
13135 and 13136 are separated by 286 nucleotides
13136 and 13137 are separated by 325 nucleotides
mRNA_4765: 13133 - SUPERFAMILY--SSF52058, at 958,000 to 961,527
13133
mRNA_4766: 13134 - BLAST ribonuclease e [Moniliophthora roreri MCA 2997], at 961,767 to 963,160
13134
mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963,483 to 966,203
13135
mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299
13136
mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504
13137
Group
Condition
mRNA
_4765
mRNA
_4766
mRNA
_4767
mRNA
_4768
mRNA
_4769
13133
13134
13135
13136
13137
growth on ypd
YPD
-0.1
-0.2
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.2
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose
-0.2
+0.3
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
+0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
-0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.7
-0.4
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.6
-0.0
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.5
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.7
+0.0
-0.0
N.D.
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