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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13134 and 13135 are separated by 322 nucleotides
13135 and 13136 are separated by 286 nucleotides
13136 and 13137 are separated by 325 nucleotides
13137 and 13138 are separated by 374 nucleotides
mRNA_4766: 13134 - BLAST ribonuclease e [Moniliophthora roreri MCA 2997], at 961,767 to 963,160
13134
mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963,483 to 966,203
13135
mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299
13136
mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504
13137
mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971,879 to 977,050
13138
Group
Condition
mRNA
_4766
mRNA
_4767
mRNA
_4768
mRNA
_4769
mRNA
_4770
13134
13135
13136
13137
13138
growth on ypd
YPD
-0.2
-0.1
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.4
-0.0
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.3
-0.3
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
-0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.0
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.1
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.0
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.0
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.0
-0.0
N.D.
-0.1
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