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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13135 and 13136 are separated by 286 nucleotides
13136 and 13137 are separated by 325 nucleotides
13137 and 13138 are separated by 374 nucleotides
13138 and 13139 are separated by 921 nucleotides
mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963,483 to 966,203
13135
mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299
13136
mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504
13137
mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971,879 to 977,050
13138
mRNA_4771: 13139 - K20062 ART4_5_7 arrestin-related trafficking adapter 4/5/7, at 977,972 to 980,923
13139
Group
Condition
mRNA
_4767
mRNA
_4768
mRNA
_4769
mRNA
_4770
mRNA
_4771
13135
13136
13137
13138
13139
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.0
N.D.
-0.4
N.D.
auxotrophy
YNB Glucose
-0.3
-0.1
N.D.
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.1
N.D.
growth on ypd
YPD
-0.1
-0.1
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
N.D.
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
N.D.
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
N.D.
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
N.D.
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
+0.1
N.D.
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