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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13141 and 13142 are separated by 704 nucleotides
13142 and 13143 are separated by 629 nucleotides
13143 and 13144 are separated by 903 nucleotides
13144 and 13145 are separated by 644 nucleotides
mRNA_4773: 13141 - KOG0254 Predicted transporter (major facilitator superfamily), at 984,416 to 986,874
13141
mRNA_4774: 13142 - K02998 RP-SAe, RPSA small subunit ribosomal protein SAe, at 987,579 to 988,756
13142
mRNA_4775: 13143 - K01724 PCBD, phhB 4a-hydroxytetrahydrobiopterin dehydratase, at 989,386 to 989,809
13143
mRNA_4776: 13144 - Hypothetical Protein, at 990,713 to 991,663
13144
mRNA_4777: 13145 - Hypothetical Protein, at 992,308 to 993,106
13145
Group
Condition
mRNA
_4773
mRNA
_4774
mRNA
_4775
mRNA
_4776
mRNA
_4777
13141
13142
13143
13144
13145
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
N.D.
-0.3
+0.6
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+0.5
-0.4
-0.3
growth on ypd
YPD
-0.0
N.D.
-0.5
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.1
+0.3
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.8
N.D.
+0.5
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.8
N.D.
+0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
-0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.2
-0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.2
+0.4
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
+0.1
-0.1
+0.4
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.2
+0.4
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.6
-0.3
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
+0.1
+0.3
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.3
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.2
+0.0
+1.2
auxotrophy
Dropout Complete
+0.3
N.D.
-0.0
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-0.3
+0.0
+1.1
growth on oleic acid
YNB Oleic Acid
+0.8
N.D.
-0.1
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.0
+0.4
+1.5
auxotrophy
YNB Glucose
+0.4
N.D.
+0.1
+0.4
+1.7
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