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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13149 and 13150 are separated by 20 nucleotides
13150 and 13151 are separated by 297 nucleotides
13151 and 13152 are separated by 915 nucleotides
13152 and 13153 are separated by 309 nucleotides
mRNA_4781: 13149 - Hypothetical Protein, at 1,001,431 to 1,001,991
13149
mRNA_4782: 13150 - Hypothetical Protein, at 1,002,012 to 1,003,066
13150
mRNA_4783: 13151 - Hypothetical Protein, at 1,003,364 to 1,007,134
13151
mRNA_4784: 13152 - BLAST calmodulin-like protein [Mycena chlorophos], at 1,008,050 to 1,008,769
13152
mRNA_4785: 13153 - KOG1577 Aldo/keto reductase family proteins, at 1,009,079 to 1,010,386
13153
Group
Condition
mRNA
_4781
mRNA
_4782
mRNA
_4783
mRNA
_4784
mRNA
_4785
13149
13150
13151
13152
13153
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.7
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
+0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.0
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
+0.1
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.6
-0.3
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