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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13154 and 13155 are separated by 142 nucleotides
13155 and 13156 are separated by 212 nucleotides
13156 and 13157 are separated by 358 nucleotides
13157 and 13158 are separated by 737 nucleotides
mRNA_4786: 13154 - Hypothetical Protein, at 1,011,001 to 1,011,498
13154
mRNA_4787: 13155 - SUPERFAMILY--SSF49785, at 1,011,641 to 1,014,528
13155
mRNA_4788: 13156 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,014,741 to 1,016,024
13156
mRNA_4789: 13157 - K18402 PHF20 PHD finger protein 20, at 1,016,383 to 1,018,943
13157
mRNA_4790: 13158 - Hypothetical Protein, at 1,019,681 to 1,020,226
13158
Group
Condition
mRNA
_4786
mRNA
_4787
mRNA
_4788
mRNA
_4789
mRNA
_4790
13154
13155
13156
13157
13158
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.3
N.D.
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.5
+0.1
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
-0.2
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.6
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.3
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
-0.2
-0.3
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
+0.0
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
-0.3
N.D.
+0.4
auxotrophy
Dropout Complete
-0.1
-0.0
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.0
N.D.
+0.2
growth on ypd
YPD
-0.1
+0.6
+0.0
N.D.
+0.6
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