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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13155 and 13156 are separated by 212 nucleotides
13156 and 13157 are separated by 358 nucleotides
13157 and 13158 are separated by 737 nucleotides
13158 and 13159 are separated by 1350 nucleotides
mRNA_4787: 13155 - SUPERFAMILY--SSF49785, at 1,011,641 to 1,014,528
13155
mRNA_4788: 13156 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,014,741 to 1,016,024
13156
mRNA_4789: 13157 - K18402 PHF20 PHD finger protein 20, at 1,016,383 to 1,018,943
13157
mRNA_4790: 13158 - Hypothetical Protein, at 1,019,681 to 1,020,226
13158
mRNA_4791: 13159 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,021,577 to 1,022,865
13159
Group
Condition
mRNA
_4787
mRNA
_4788
mRNA
_4789
mRNA
_4790
mRNA
_4791
13155
13156
13157
13158
13159
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
N.D.
-0.8
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.5
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
N.D.
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
-0.2
-0.3
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
N.D.
-0.4
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
N.D.
+0.6
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
N.D.
+0.4
-0.1
auxotrophy
Dropout Complete
-0.0
+0.0
N.D.
+0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
N.D.
-0.6
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
N.D.
+0.2
+0.3
growth on ypd
YPD
+0.6
+0.0
N.D.
+0.6
+0.3
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