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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13159 and 13160 are separated by 940 nucleotides
13160 and 13161 are separated by 1516 nucleotides
13161 and 13162 are separated by 352 nucleotides
13162 and 13163 are separated by 353 nucleotides
mRNA_4791: 13159 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,021,577 to 1,022,865
13159
mRNA_4792: 13160 - Hypothetical Protein, at 1,023,806 to 1,024,351
13160
mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1,025,868 to 1,027,318
13161
mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225
13162
mRNA_4795: 13163 - Hypothetical Protein, at 1,028,579 to 1,029,667
13163
Group
Condition
mRNA
_4791
mRNA
_4792
mRNA
_4793
mRNA
_4794
mRNA
_4795
13159
13160
13161
13162
13163
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-4.6
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.1
-1.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-1.0
-0.5
+0.6
+0.4
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.1
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.2
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.9
-0.1
+0.7
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
-0.5
+0.2
-0.2
+0.1
+0.4
auxotrophy
Dropout Complete
-0.2
+0.2
+0.0
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.8
-0.0
+0.7
+0.7
growth on oleic acid
YNB Oleic Acid
-0.3
+0.6
+0.0
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
+0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.5
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.2
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.7
-0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
+0.0
+1.0
-0.1
growth on ypd
YPD
+0.3
+0.2
+0.1
-0.4
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.0
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.5
-0.2
-0.5
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.3
+0.0
+0.2
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