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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13160 and 13161 are separated by 1516 nucleotides
13161 and 13162 are separated by 352 nucleotides
13162 and 13163 are separated by 353 nucleotides
13163 and 13164 are separated by 1468 nucleotides
mRNA_4792: 13160 - Hypothetical Protein, at 1,023,806 to 1,024,351
13160
mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1,025,868 to 1,027,318
13161
mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225
13162
mRNA_4795: 13163 - Hypothetical Protein, at 1,028,579 to 1,029,667
13163
mRNA_4796: 13164 - Hypothetical Protein, at 1,031,136 to 1,031,744
13164
Group
Condition
mRNA
_4792
mRNA
_4793
mRNA
_4794
mRNA
_4795
mRNA
_4796
13160
13161
13162
13163
13164
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-4.6
-0.5
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
-1.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.5
+0.6
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.6
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
-0.1
+0.7
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.2
-0.5
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.2
+0.2
N.D.
auxotrophy
Dropout Complete
+0.2
+0.0
+0.3
-0.2
N.D.
growth on ypd
YPD
+0.2
+0.1
-0.4
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
+0.0
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.0
+0.7
+0.7
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.0
-0.0
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
+0.1
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.0
+1.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.0
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
+0.0
+0.2
N.D.
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