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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13164 and 13165 are separated by 748 nucleotides
13165 and 13166 are separated by 622 nucleotides
13166 and 13167 are separated by 1639 nucleotides
13167 and 13168 are separated by 783 nucleotides
mRNA_4796: 13164 - Hypothetical Protein, at 1,031,136 to 1,031,744
13164
mRNA_4797: 13165 - K02901 RP-L27e, RPL27 large subunit ribosomal protein L27e, at 1,032,493 to 1,033,632
13165
mRNA_4798: 13166 - Hypothetical Protein, at 1,034,255 to 1,037,154
13166
mRNA_4799: 13167 - K05676 ABCD2, ALDL1 ATP-binding cassette, subfamily D (ALD), member 2, at 1,038,794 to 1,042,061
13167
mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1,042,845 to 1,046,169
13168
Group
Condition
mRNA
_4796
mRNA
_4797
mRNA
_4798
mRNA
_4799
mRNA
_4800
13164
13165
13166
13167
13168
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
-0.7
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.7
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.6
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.0
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.1
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.1
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.0
+0.0
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