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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13166 and 13167 are separated by 1639 nucleotides
13167 and 13168 are separated by 783 nucleotides
13168 and 13169 are separated by 90 nucleotides
13169 and 13170 are separated by 265 nucleotides
mRNA_4798: 13166 - Hypothetical Protein, at 1,034,255 to 1,037,154
13166
mRNA_4799: 13167 - K05676 ABCD2, ALDL1 ATP-binding cassette, subfamily D (ALD), member 2, at 1,038,794 to 1,042,061
13167
mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1,042,845 to 1,046,169
13168
mRNA_4801: 13169 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,046,260 to 1,047,966
13169
mRNA_4802: 13170 - K09313 CUTL homeobox protein cut-like, at 1,048,232 to 1,051,035
13170
Group
Condition
mRNA
_4798
mRNA
_4799
mRNA
_4800
mRNA
_4801
mRNA
_4802
13166
13167
13168
13169
13170
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.3
-1.7
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.7
-0.2
-0.1
+0.7
growth on ypd
YPD
-0.1
-0.1
-0.2
-0.4
+0.3
growth on oleic acid
YNB Glucose
-0.7
-0.1
-0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-0.1
+0.9
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.2
-0.4
+0.7
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.1
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
-0.1
+0.1
+1.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
-0.0
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.3
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.0
+1.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
-0.0
+0.8
-0.4
auxotrophy
Dropout Complete
-0.1
-0.1
-0.1
+0.1
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.2
-0.3
+1.2
auxotrophy
YNB Glucose
+0.2
-0.1
+0.0
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.0
+0.0
+1.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
+0.0
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.1
+1.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.1
+0.4
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.0
+1.5
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
-0.0
+1.0
+0.6
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