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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13168 and 13169 are separated by 90 nucleotides
13169 and 13170 are separated by 265 nucleotides
13170 and 13171 are separated by 347 nucleotides
13171 and 13172 are separated by 285 nucleotides
mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1,042,845 to 1,046,169
13168
mRNA_4801: 13169 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1,046,260 to 1,047,966
13169
mRNA_4802: 13170 - K09313 CUTL homeobox protein cut-like, at 1,048,232 to 1,051,035
13170
mRNA_4803: 13171 - BLAST ribosomal protein Mrp49 [Schizosaccharomyces octo..., at 1,051,383 to 1,052,079
13171
mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205
13172
Group
Condition
mRNA
_4800
mRNA
_4801
mRNA
_4802
mRNA
_4803
mRNA
_4804
13168
13169
13170
13171
13172
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.7
-0.0
N.D.
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
+1.2
N.D.
-2.1
growth on ypd
YPD
-0.2
-0.4
+0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.7
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.5
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
+0.7
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.6
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.8
-0.4
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.9
-0.4
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.6
+0.0
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
+0.1
+1.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+1.0
N.D.
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
+0.6
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+1.5
-0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
+0.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+1.1
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+1.0
+0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+1.3
+0.0
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.6
+0.2
N.D.
+0.3
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