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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13171 and 13172 are separated by 285 nucleotides
13172 and 13173 are separated by 912 nucleotides
13173 and 13174 are separated by 1007 nucleotides
13174 and 13175 are separated by 326 nucleotides
mRNA_4803: 13171 - BLAST ribosomal protein Mrp49 [Schizosaccharomyces octo..., at 1,051,383 to 1,052,079
13171
mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205
13172
mRNA_4805: 13173 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,055,118 to 1,056,196
13173
mRNA_4806: 13174 - Hypothetical Protein, at 1,057,204 to 1,058,778
13174
mRNA_4807: 13175 - K03119 tauD taurine dioxygenase, at 1,059,105 to 1,060,772
13175
Group
Condition
mRNA
_4803
mRNA
_4804
mRNA
_4805
mRNA
_4806
mRNA
_4807
13171
13172
13173
13174
13175
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
-0.2
-0.5
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-2.1
-0.1
+0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.7
-0.0
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.2
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.3
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.5
+0.6
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.5
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.2
-0.1
+0.3
auxotrophy
Dropout Complete
N.D.
+0.1
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.1
+0.7
-0.4
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.7
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.3
+0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.1
+0.7
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.2
+0.6
+0.4
auxotrophy
YNB Glucose
N.D.
+0.5
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.1
+0.9
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.6
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
-0.1
+0.6
+0.5
growth on ypd
YPD
N.D.
+0.1
+1.1
-0.1
+1.2
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