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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13172 and 13173 are separated by 912 nucleotides
13173 and 13174 are separated by 1007 nucleotides
13174 and 13175 are separated by 326 nucleotides
13175 and 13176 are separated by 756 nucleotides
mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205
13172
mRNA_4805: 13173 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,055,118 to 1,056,196
13173
mRNA_4806: 13174 - Hypothetical Protein, at 1,057,204 to 1,058,778
13174
mRNA_4807: 13175 - K03119 tauD taurine dioxygenase, at 1,059,105 to 1,060,772
13175
mRNA_4808: 13176 - K12880 THOC3 THO complex subunit 3, at 1,061,529 to 1,063,050
13176
Group
Condition
mRNA
_4804
mRNA
_4805
mRNA
_4806
mRNA
_4807
mRNA
_4808
13172
13173
13174
13175
13176
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.2
-0.5
-1.6
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.1
-0.1
+0.2
+0.6
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.7
-0.0
+0.4
-0.6
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.2
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.3
+0.2
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
-0.1
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.5
+0.6
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.5
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
-0.1
+0.3
+0.0
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.1
+0.1
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.7
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.7
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.7
-0.2
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.0
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
+0.6
+0.4
-0.1
auxotrophy
YNB Glucose
+0.5
+0.2
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.6
+0.0
+0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
+0.9
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
+0.6
+0.5
+0.0
growth on ypd
YPD
+0.1
+1.1
-0.1
+1.2
-0.2
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