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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13175 and 13176 are separated by 756 nucleotides
13176 and 13177 are separated by 149 nucleotides
13177 and 13178 are separated by 302 nucleotides
13178 and 13179 are separated by 1224 nucleotides
mRNA_4807: 13175 - K03119 tauD taurine dioxygenase, at 1,059,105 to 1,060,772
13175
mRNA_4808: 13176 - K12880 THOC3 THO complex subunit 3, at 1,061,529 to 1,063,050
13176
mRNA_4809: 13177 - Hypothetical Protein, at 1,063,200 to 1,067,794
13177
mRNA_4810: 13178 - KOG1304 Amino acid transporters, at 1,068,097 to 1,069,702
13178
mRNA_4811: 13179 - Hypothetical Protein, at 1,070,927 to 1,071,764
13179
Group
Condition
mRNA
_4807
mRNA
_4808
mRNA
_4809
mRNA
_4810
mRNA
_4811
13175
13176
13177
13178
13179
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
-0.7
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
-0.5
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.0
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-0.6
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.1
+0.0
N.D.
auxotrophy
Dropout Complete
-0.1
+0.2
+0.0
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.6
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.3
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.0
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose
+0.1
+0.3
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.0
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.4
+0.6
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
+0.4
+0.1
N.D.
growth on ypd
YPD
+1.2
-0.2
+0.6
-0.4
N.D.
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