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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13177 and 13178 are separated by 302 nucleotides
13178 and 13179 are separated by 1224 nucleotides
13179 and 13180 are separated by 569 nucleotides
13180 and 13181 are separated by 363 nucleotides
mRNA_4809: 13177 - Hypothetical Protein, at 1,063,200 to 1,067,794
13177
mRNA_4810: 13178 - KOG1304 Amino acid transporters, at 1,068,097 to 1,069,702
13178
mRNA_4811: 13179 - Hypothetical Protein, at 1,070,927 to 1,071,764
13179
mRNA_4812: 13180 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,072,334 to 1,073,346
13180
mRNA_4813: 13181 - Hypothetical Protein, at 1,073,710 to 1,074,508
13181
Group
Condition
mRNA
_4809
mRNA
_4810
mRNA
_4811
mRNA
_4812
mRNA
_4813
13177
13178
13179
13180
13181
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.0
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
N.D.
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
N.D.
+0.5
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.3
N.D.
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
N.D.
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
N.D.
+0.3
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
N.D.
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
N.D.
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
+0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.2
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
+1.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
N.D.
+0.8
N.D.
growth on ypd
YPD
+0.6
-0.4
N.D.
+1.2
N.D.
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