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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13187 and 13188 are separated by 1019 nucleotides
13188 and 13189 are separated by 327 nucleotides
13189 and 13190 are separated by 667 nucleotides
13190 and 13191 are separated by 571 nucleotides
mRNA_4819: 13187 - Hypothetical Protein, at 1,085,676 to 1,087,276
13187
mRNA_4820: 13188 - Hypothetical Protein, at 1,088,296 to 1,089,046
13188
mRNA_4821: 13189 - HMMPfam-Arylsulfotransferase (ASST)-PF14269, at 1,089,374 to 1,091,580
13189
mRNA_4822: 13190 - K13800 CMPK1, UMPK UMP-CMP kinase, at 1,092,248 to 1,093,445
13190
mRNA_4823: 13191 - K12191 CHMP2A charged multivesicular body protein 2A, at 1,094,017 to 1,095,155
13191
Group
Condition
mRNA
_4819
mRNA
_4820
mRNA
_4821
mRNA
_4822
mRNA
_4823
13187
13188
13189
13190
13191
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.8
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.3
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.5
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.7
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
+0.1
-0.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.2
-0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.3
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.4
-0.0
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.1
-0.2
N.D.
N.D.
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