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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13190 and 13191 are separated by 571 nucleotides
13191 and 13192 are separated by 237 nucleotides
13192 and 13193 are separated by 437 nucleotides
13193 and 13194 are separated by 172 nucleotides
mRNA_4822: 13190 - K13800 CMPK1, UMPK UMP-CMP kinase, at 1,092,248 to 1,093,445
13190
mRNA_4823: 13191 - K12191 CHMP2A charged multivesicular body protein 2A, at 1,094,017 to 1,095,155
13191
mRNA_4824: 13192 - Hypothetical Protein, at 1,095,393 to 1,096,891
13192
mRNA_4825: 13193 - Hypothetical Protein, at 1,097,329 to 1,098,852
13193
mRNA_4826: 13194 - SUPERFAMILY--SSF52047, at 1,099,025 to 1,100,594
13194
Group
Condition
mRNA
_4822
mRNA
_4823
mRNA
_4824
mRNA
_4825
mRNA
_4826
13190
13191
13192
13193
13194
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.2
-0.2
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.2
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.4
-0.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.4
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
+0.2
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.5
+0.1
+0.1
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