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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13193 and 13194 are separated by 172 nucleotides
13194 and 13195 are separated by 403 nucleotides
13195 and 13196 are separated by 177 nucleotides
13196 and 13197 are separated by 287 nucleotides
mRNA_4825: 13193 - Hypothetical Protein, at 1,097,329 to 1,098,852
13193
mRNA_4826: 13194 - SUPERFAMILY--SSF52047, at 1,099,025 to 1,100,594
13194
mRNA_4827: 13195 - Hypothetical Protein, at 1,100,998 to 1,102,554
13195
mRNA_4828: 13196 - SUPERFAMILY--SSF52047, at 1,102,732 to 1,104,516
13196
mRNA_4829: 13197 - K01298 CPA2 carboxypeptidase A2, at 1,104,804 to 1,106,642
13197
Group
Condition
mRNA
_4825
mRNA
_4826
mRNA
_4827
mRNA
_4828
mRNA
_4829
13193
13194
13195
13196
13197
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.6
-0.5
-0.1
auxotrophy
Dropout Complete
+0.1
-0.1
-0.2
-0.4
-0.3
auxotrophy
YNB Glucose
-0.0
+0.0
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.3
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.7
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.2
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.0
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.2
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
+0.3
-0.7
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.6
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.1
-0.1
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.2
+0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
-0.8
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.3
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.3
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.1
-0.1
+0.3
growth on ypd
YPD
+0.2
+0.3
-0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
+0.0
+0.3
+0.5
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