Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13203 and 13204 are separated by 310 nucleotides13204 and 13205 are separated by 16 nucleotides13205 and 13206 are separated by 1519 nucleotides13206 and 13207 are separated by 254 nucleotides mRNA_4835: 13203 - KOG0490 Transcription factor, contains HOX domain, at 1,114,213 to 1,116,199 13203 mRNA_4836: 13204 - BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1..., at 1,116,510 to 1,117,726 13204 mRNA_4837: 13205 - K20872 NEK2 NIMA (never in mitosis gene a)-related kinase 2, at 1,117,743 to 1,117,911 13205 mRNA_4838: 13206 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 1,119,431 to 1,120,749 13206 mRNA_4839: 13207 - K20300 TRAPPC1, BET5 trafficking protein particle complex subunit 1, at 1,121,004 to 1,121,635 13207
Group Condition mRNA_4835 mRNA_4836 mRNA_4837 mRNA_4838 mRNA_4839
13203 13204 13205 13206 13207
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -1.9 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.9 -0.5 N.D. N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -0.4 N.D. N.D. N.D.
growth on ypd YPD +0.1 -0.7 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 +0.0 N.D. N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.6 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 +0.3 N.D. N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.1 -0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose -0.2 -0.1 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 +0.2 N.D. N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.2 +0.0 N.D. N.D. N.D.
growth on oleic acid YNB Glucose -0.2 +0.1 N.D. N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.1 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.4 N.D. N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.2 N.D. N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.8 N.D. N.D. N.D.
auxotrophy Dropout Complete +0.1 +0.6 N.D. N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.6 N.D. N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.4 +0.5 N.D. N.D. N.D.
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