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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13213 and 13214 are separated by 208 nucleotides
13214 and 13215 are separated by 253 nucleotides
13215 and 13216 are separated by 50 nucleotides
13216 and 13217 are separated by 192 nucleotides
mRNA_4845: 13213 - Hypothetical Protein, at 1,130,443 to 1,131,980
13213
mRNA_4846: 13214 - K03943 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, at 1,132,189 to 1,133,318
13214
mRNA_4847: 13215 - Hypothetical Protein, at 1,133,572 to 1,137,413
13215
mRNA_4848: 13216 - Hypothetical Protein, at 1,137,464 to 1,141,122
13216
mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1,141,315 to 1,143,566
13217
Group
Condition
mRNA
_4845
mRNA
_4846
mRNA
_4847
mRNA
_4848
mRNA
_4849
13213
13214
13215
13216
13217
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.2
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.1
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.1
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.0
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.0
-0.1
auxotrophy
Dropout Complete
+0.1
N.D.
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
+0.0
+0.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
-0.1
+0.1
growth on ypd
YPD
-0.2
N.D.
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.0
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.0
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.1
+0.1
+0.0
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